标题:3D-QSAR and docking studies on piperidine-substituted diarylpyrimidine analogues as HIV-1 reverse transcriptase inhibitors
作者:Liu, Xin; Chen, Xuwang; Zhang, Lingzi; Zhan, Peng; Liu, Xinyong
作者机构:[Liu, Xin; Zhang, Lingzi; Zhan, Peng; Liu, Xinyong] Shandong Univ, Sch Pharmaceut Sci, Dept Med Chem, Key Lab Chem Biol,Minist Educ, Jinan 250012, Sha 更多
通讯作者:Zhan, P
通讯作者地址:[Zhan, P]Shandong Univ, Sch Pharmaceut Sci, Dept Med Chem, Key Lab Chem Biol,Minist Educ, 44 West Culture Rd, Jinan 250012, Shandong, Peoples R China.
来源:MEDICINAL CHEMISTRY RESEARCH
出版年:2015
卷:24
期:8
页码:3314-3326
DOI:10.1007/s00044-015-1381-1
关键词:3D-QSAR; CoMFA; CoMSIA; Molecular docking; NNRTIs; DAPYs
摘要:In this paper, 65 small molecules of HIV-1 non-nucleoside reverse transcriptase inhibitors (NNRTIs) were aligned by two different alignment methods (substructure-based and docking-based alignment) for the construction of three-dimensional quantitative structure-activity relationship models. And the molecular descriptors were calculated by comparative molecular field analysis (CoMFA) and comparative molecular similarity indices analysis (CoMSIA) methods. Statistical parameters derived from the models using the above two different alignment methods showed that the docking-based CoMFA and CoMSIA models were better than the substructure-based models with both higher internal consistencies (q (2) of 0.727 and 0.698, respectively) and external predictive powers ( of 0.906 and 0.940, respectively). According to the generated contour maps, several key structural features required for increasing the biological activity of compounds were achieved. Additionally, a docking study was also performed to explore the binding mechanisms of this series of compounds, and the obtained binding interactions are in agreement with the results of the contour maps. These structural-based and ligand-based computational studies can offer useful references for the further rational design of HIV-1 NNRTIs.
收录类别:SCOPUS;SCIE
WOS核心被引频次:5
Scopus被引频次:7
资源类型:期刊论文
原文链接:https://www.scopus.com/inward/record.uri?eid=2-s2.0-84937729951&doi=10.1007%2fs00044-015-1381-1&partnerID=40&md5=30df7e06b1800626f1bc35fcda8f90f4
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