标题:ceRNA network construction and comparison of gastric cancer with or without Helicobacter pylori infection
作者:Liu Y.; Zhu J.; Ma X.; Han S.; Xiao D.; Jia Y.; Wang Y.
作者机构:[Liu, Y] Central Laboratory, Jinan Central Hospital Affiliated to Shandong University, Jinan, China;[ Zhu, J] Department of Gastroenterology, Jinan Ce 更多
通讯作者:Jia, Y(jiayanfei_@126.com)
通讯作者地址:[Jia, Y] Central Laboratory, Jinan Central Hospital Affiliated to Shandong UniversityChina;
来源:Journal of Cellular Physiology
出版年:2018
DOI:10.1002/jcp.27467
关键词:ceRNA network; gastric cancer; Helicobacter pylori; lncRNA; miRNA
摘要:Gastric cancer (GC) is a lethal disease, and among its variety of etiological factors, Helicobacter pylori (H. pylori) infection is the strongest risk factor. However, the genetic and molecular mechanisms underlying H. pylori-related GC need further elucidation. We investigated the competing endogenous RNA (ceRNA) network differences between H. pylori (+) and H. pylori (−) GC. The long noncoding RNA (lncRNA), microRNA (miRNA), and messenger RNA (mRNA) expression data from 32 adjacent noncancerous samples and 18 H. pylori (+) and 141 H. pylori (−) stomach adenocarcinoma samples were downloaded from the TCGA database. After construction of lncRNA–miRNA–mRNA ceRNA networks of H. pylori (+) and H. pylori (−) GC, Panther and Kobas databases were used to analyze the Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways. Finally, survival analysis was used to discover the key genes. In H. pylori (+) GC, we identified a total of 1,419 lncRNAs, 82 miRNAs, and 2,501 mRNAs with differentially expressed profiles. In H. pylori (−) GC, 2,225 lncRNAs, 130 miRNAs, and 3,146 mRNAs were differentially expressed. Furthermore, three unique pathways (cytokine–cytokine receptor interaction, HIF-1 signaling pathway, and Wnt signaling pathway) were enriched in H. pylori (+) GC. According to the overall survival analysis, three lncRNAs (AP002478.1, LINC00111, and LINC00313) and two mRNAs (MYB and COL1A1) functioned as prognostic biomarkers for patients with H. pylori (+) GC. In conclusion, our study has identified the differences in ceRNA regulatory networks between H. pylori (+) and H. pylori (−) GC and provides a rich candidate reservoir for future studies. © 2018 Wiley Periodicals, Inc.
收录类别:SCOPUS
资源类型:期刊论文
原文链接:https://www.scopus.com/inward/record.uri?eid=2-s2.0-85055699819&doi=10.1002%2fjcp.27467&partnerID=40&md5=fa95e5576efdfa05e5263782945c5f67
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