标题:De novo assembly of the donkey white blood cell transcriptome and a comparative analysis of phenotype-associated genes between donkeys and horses
作者:Xie F.-Y.; Feng Y.-L.; Wang H.-H.; Ma Y.-F.; Yang Y.; Wang Y.-C.; Shen W.; Pan Q.-J.;等 更多
作者机构:[Xie, F.-Y] Institute of Reproductive Science, Qingdao Agricultural University, Qingdao, Shandong, China, Key Laboratory of Animal Reproduction and Ge 更多
来源:PLoS ONE
出版年:2015
卷:10
期:7
DOI:10.1371/journal.pone.0133258
摘要:Prior to the mechanization of agriculture and labor-intensive tasks, humans used donkeys (Equus africanus asinus) for farm work and packing. However, as mechanization increased, donkeys have been increasingly raised for meat, milk, and fur in China. To maintain the development of the donkey industry, breeding programs should focus on traits related to these new uses. Compared to conventional marker-assisted breeding plans, genome-and transcriptome-based selection methods are more efficient and effective. To analyze the coding genes of the donkey genome, we assembled the transcriptome of donkey white blood cells de novo. Using transcriptomic deep-sequencing data, we identified 264,714 distinct donkey unigenes and predicted 38,949 protein fragments. We annotated the donkey unigenes by BLAST searches against the non-redundant (NR) protein database. We also compared the donkey protein sequences with those of the horse (E. caballus) and wild horse (E. przewalskii), and linked the donkey protein fragments with mammalian phenotypes. As the outer ear size of donkeys and horses are obviously different, we compared the outer ear size-associated proteins in donkeys and horses. We identified three ear sizeassociated proteins, HIC1, PRKRA, and KMT2A, with sequence differences among the donkey, horse, and wild horse loci. Since the donkey genome sequence has not been released, the de novo assembled donkey transcriptome is helpful for preliminary investigations of donkey cultivars and for genetic improvement. Copyright: © 2015 Xie et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
收录类别:SCOPUS;SCOPUS
最新影响因子:2.806
当年影响因子:3.057
JCR分区(WOS):Q1
资源类型:期刊论文
原文链接:https://www.scopus.com/inward/record.uri?eid=2-s2.0-84941958811&doi=10.1371%2fjournal.pone.0133258&partnerID=40&md5=77a693778adecafb5afd63fc74826c08
TOP