标题:IRIS3: integrated cell-type-specific regulon inference server from single-cell RNA-Seq
作者:Ma, Anjun; Wang, Cankun; Chang, Yuzhou; Brennan, Faith H.; McDermaid, Adam; Liu, Bingqiang; Zhang, Chi; Popovich, Phillip G.; Ma, Qin
作者机构:[Ma, Anjun; Wang, Cankun; Chang, Yuzhou; Ma, Qin] Ohio State Univ, Coll Med, Dept Biomed Informat, Columbus, OH 43210 USA.; [Brennan, Faith H.; Popo 更多
通讯作者地址:Ma, Q (corresponding author), Ohio State Univ, Coll Med, Dept Biomed Informat, Columbus, OH 43210 USA.
来源:NUCLEIC ACIDS RESEARCH
出版年:2020
卷:48
期:W1
页码:W275-W286
DOI:10.1093/nar/gkaa394
摘要:A group of genes controlled as a unit, usually by the same repressor or activator gene, is known as a regulon. The ability to identify active regulons within a specific cell type, i.e., cell-type-specific regulons (CTSR), provides an extraordinary opportunity to pinpoint crucial regulators and target genes responsible for complex diseases. However, the identification of CTSRs from single-cell RNA-Seq (scRNA-Seq) data is computationally challenging. We introduce IRIS3, the first-of-its-kind web server for CTSR inference from scRNA-Seq data for human and mouse. IRIS3 is an easy-to-use server empowered by over 20 functionalities to support comprehensive interpretations and graphical visualizations of identified CTSRs. CTSR data can be used to reliably characterize and distinguish the corresponding cell type from others and can be combined with other computational or experimental analyses for biomedical studies. CTSRs can, therefore, aid in the discovery of major regulatory mechanisms and allow reliable constructions of global transcriptional regulation networks encoded in a specific cell type. The broader impact of IRIS3 includes, but is not limited to, investigation of complex diseases hierarchies and heterogeneity, causal gene regulatory network construction, and drug development. IRIS3 is freely accessible from https://bmbl.bmi.osumc.edu/iris3/ with no login requirement.
收录类别:SCOPUS;SCIE
Scopus被引频次:1
资源类型:期刊论文
原文链接:https://www.scopus.com/inward/record.uri?eid=2-s2.0-85087320566&doi=10.1093%2fnar%2fgkaa394&partnerID=40&md5=1dd8332552f8f14c0dcbfb87b35dd7fd
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